PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_9097A97D9.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 108aa    MW: 12312.1 Da    PI: 7.7537
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_9097A97D9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.25.5e-181998190
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                           +fYn Y+ e+GF vr s+s+ +  +++  +++ vC + gk+ +e++k         + r+gC+a++++ + +d+ w++++ +++HnH+l+
  Traes_6DL_9097A97D9.1 19 EFYNLYSWECGFGVRLSSSRMN-VDRKRCMQEIVCACAGKPLKENTK---------SARCGCTAMIRLLRASDNGWYISEHKEDHNHPLS 98
                           6****************99998.66668899*********9997655.........9*******************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-141998IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MVVNPTVGAS FDSIDEAYEF YNLYSWECGF GVRLSSSRMN VDRKRCMQEI VCACAGKPLK  60
ENTKSARCGC TAMIRLLRAS DNGWYISEHK EDHNHPLSLT CGEKMHWK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233160.12e-58PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5GXY83e-78W5GXY8_WHEAT; Uncharacterized protein
STRINGBRADI2G27040.12e-55(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.14e-16FAR1-related sequence 8
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]